A "Deposit All Items" button

A simple "deposit all items" button when you are viewing inside a chest.

Why?

It tackles the problem of chest inventory clutter, but still requires the player to organize their chest inventory to some degree. You can't withdrawal all, only deposit all. You still have to manually select what you want to put in your inventory.

But hoppers...

Hoppers are great. The Item sorting machines you can make with them are even more great. But their clunky, rarely pretty, and have such a skill gap that many don't even fuss with it. A "Deposit all items" button is the best of both worlds. 

Not enough chest inventory space though

It deposits what it can. Build more chests.